fastq2bcl

• fastq2bcl package
  • Submodules
  • fastq2bcl.cli module
    • fastq2bcl()
    • main()
    • mock_run_id()
    • parse_args()
    • run()
    • set_mask()
    • setup_logging()
  • fastq2bcl.parser module
    • parse_seqdesc_fields()
    • validate_fields()
  • fastq2bcl.reader module
    • get_file_handlers()
    • get_mask_from_files()
    • read_fastq_files()
    • read_first_record()
  • fastq2bcl.writer module
    • append_data_to_bcl()
    • encode_cluster_byte()
    • encode_loc_bytes()
    • generate_run_info_xml()
    • get_cycle_dir()
    • init_bcl_and_write_cluster_counts()
    • write_bcl_and_stats()
    • write_control()
    • write_cycle()
    • write_filter()
    • write_locs()
    • write_run_info_xml()
    • write_stat_file()
  • Module contents