Index

A

append_data_to_bcl() (in module fastq2bcl.writer)

E

encode_cluster_byte() (in module fastq2bcl.writer)

encode_loc_bytes() (in module fastq2bcl.writer)

F

fastq2bcl module fastq2bcl() (in module fastq2bcl.cli) fastq2bcl.cli module

fastq2bcl.parser module fastq2bcl.reader module fastq2bcl.writer module

G

generate_run_info_xml() (in module fastq2bcl.writer) get_cycle_dir() (in module fastq2bcl.writer)

get_file_handlers() (in module fastq2bcl.reader) get_mask_from_files() (in module fastq2bcl.reader)

I

init_bcl_and_write_cluster_counts() (in module fastq2bcl.writer)

M

main() (in module fastq2bcl.cli) mock_run_id() (in module fastq2bcl.cli) module fastq2bcl fastq2bcl.cli fastq2bcl.parser fastq2bcl.reader fastq2bcl.writer

P

parse_args() (in module fastq2bcl.cli)

parse_seqdesc_fields() (in module fastq2bcl.parser)

R

read_fastq_files() (in module fastq2bcl.reader)

read_first_record() (in module fastq2bcl.reader) run() (in module fastq2bcl.cli)

S

set_mask() (in module fastq2bcl.cli)

setup_logging() (in module fastq2bcl.cli)

V

validate_fields() (in module fastq2bcl.parser)

W

write_bcl_and_stats() (in module fastq2bcl.writer) write_control() (in module fastq2bcl.writer) write_cycle() (in module fastq2bcl.writer)

write_filter() (in module fastq2bcl.writer) write_locs() (in module fastq2bcl.writer) write_run_info_xml() (in module fastq2bcl.writer) write_stat_file() (in module fastq2bcl.writer)